Shopify Integration With QuickBooks


Autofy automatically enters orders, keeps your accounting straight, syncs inventory, and more by connecting your Shopify store directly with QuickBooks Desktop or Online.  Forget about manual data entry, and start saving time!

Save over 60% of your time processing orders. It's lightning fast.

Always Keep QuickBooks inventory in sync with your Shopify store.

Be an accounting hero by making all the right QuickBooks entries.


Process Orders:

  • Individually
  • Daily batch

Consolidate Customers and Items

Record Sales Tax

Configurable Item Description

Use Your Own:

  • Shipping item
  • Handling / Processing item
  • Discount item
  • Deposit-to Account

Insert them as any supported QuickBooks transaction.


Autofy is free for 14 days, and includes helpful support! Get started in just a few minutes:


How does Autofy process data?

Orders Autofy processes all orders seamlessly from Shopify into QuickBooks. Create a single daily summary sales receipt that combines all items sold for the day, or have Autofy enter them individually on a per-order basis.



Products Inventory counts available in QuickBooks are updated in Shopify to make sure your online store is always up to date with the proper inventory. 


More Benefits

Fast setup and easy to use.

Set it to run automatically, no extra clicks needed.

Create advanced filters and mapping to match your needs.

Smart processing means orders get handled the way you want.

See a history of synced orders with Status Center.

Expert support helps solve problems as they arise.


What Does The Workflow Look Like?


Frequently Asked Questions


Q: Which versions of QuickBooks do you support?

A: We support all editions of QuickBooks Desktop, 2009 forward.  We also support all versions of QuickBooks Online.

Q: Is it easy to set up?

A: Yes!  Autofy has a template sync already set up for you, with the most popular settings.  So you don't have to build your sync from scratch.

Q: How often does Autofy sync data with Shopify?

A: You can choose a number of options, from once per day, down to once every 30 minutes.  If processing daily summary orders, then Autofy will run once per day.

Q: Does Autofy put in new customers for me when orders come in?

A: Yes, but only if you have Autofy process orders individually.  If you choose to process in daily summary orders, then Autofy re-uses the same generic customer you set up.

Q: What am I choosing with "My Shopify Customer" or "My Shopify Item Name"?

A: This is where you tell Autofy which generic customer or generic item to use, if Autofy is processing daily summary orders in QuickBooks, or you just want to use a generic item in QuickBooks to simplify accounting.

Q: What does Shipping Item, Handling Item, and Discount Item mean?

A: These are the exact item names you have set up in your QuickBooks to track each one.  For example, your QuickBooks item list may have an item in it dedicated to capturing shipping cost.  The name of this item is what you put in your Autofy settings.

Q: What should I set Autofy to sync to in QuickBooks, Sales Receipts or Invoices...or something else?

A: We think the best choice by far is Sales Receipt.  This is because in ecommerce, the customer pays for your product at the time of order.  QuickBooks Sales Receipts are like an Invoice and Payment all in one, so we almost always recommend that you use Sales Receipts.

Q: How do I get started?

A: Click "Try It Free" to create and Autofy account.  It's free for 14 days!

Q: How can I get help or ask questions?

A: Several ways - you can click the chat bubble in the lower right on this page, click Contact Us at the bottom, or email for product assistance.